Genomic variant #0000023962

Individual ID 00021399
Chromosome 2
Allele Parent #2
Affects function (as reported) Affects function
Affects function (by curator) Affects function
DNA change (genomic) (Relative to hg19 / GRCh37) g.48025898del
Reference -
DB-ID MSH6_000060
dbSNP ID -
Variant remarks -
Genetic origin Germline
Segregation -
Also Known As -
Is Greek Founder -
Geographic Origin (for founder variants) -
Average frequency (large NGS studies) Variant not found in online data sets
Average frequency in greek population 0.00017
Allele Count 1
Allele Number 5762
Owner Despoina Kalfakakou
Options




Variant on transcripts


Gene     

AscendingTranscript     

Affects function     

Exon     

DNA change (cDNA)     

RNA change     

Protein     
MSH6 NM_000179.2 +/+ - c.776del r.(?) p.(Gly259Valfs*20)
MSH6 NM_001281492.1 +/+ - c.386del r.(?) p.(Gly129Valfs*20)
MSH6 NM_001281493.1 +/+ - c.-131del r.(=) p.(=)
MSH6 NM_001281494.1 +/+ - c.-131del r.(=) p.(=)



Screenings


AscendingScreening ID     

Template     

Technique     

Type     

Genes screened     

Variants found     

Owner     
0000001076 DNA SEQ-NG-I 1 - 11 Despoina Kalfakakou