Genomic variant #0000030508

Individual ID 00017747
Chromosome 2
Allele Parent #2
Affects function (as reported) Effect unknown
Affects function (by curator) Effect unknown
DNA change (genomic) (Relative to hg19 / GRCh37) g.47635608_47635610del
Reference -
DB-ID MSH2_000056 See all 3 reported entries
dbSNP ID rs267607919
Variant remarks -
Genetic origin Germline
Segregation -
Also Known As -
Is Greek Founder -
Geographic Origin (for founder variants) -
Average frequency (large NGS studies) Variant not found in online data sets
Average frequency in greek population 0.00051
Allele Count 3
Allele Number 5840
Owner Despoina Kalfakakou
Options




Variant on transcripts


Gene     

AscendingTranscript     

Affects function     

Exon     

DNA change (cDNA)     

RNA change     

Protein     
MSH2 NM_000251.2 ?/? - c.280_282del r.(?) p.(Leu94del)
MSH2 NM_001258281.1 ?/? - c.82_84del r.(?) p.(Leu28del)



Screenings


AscendingScreening ID     

Template     

Technique     

Type     

Genes screened     

Variants found     

Owner     
0000001704 DNA SEQ-NG-I 1 - 7 Despoina Kalfakakou