Genomic variant #0000031600

Individual ID 00017797
Chromosome 9
Allele Parent #2
Affects function (as reported) Probably does not affect function
Affects function (by curator) Probably does not affect function
DNA change (genomic) (Relative to hg19 / GRCh37) g.98240378C>T
Reference Chassaing et al (2016)
DB-ID PTCH1_000089 See all 3 reported entries
dbSNP ID rs142274954
Variant remarks -
Genetic origin Germline
Segregation -
Also Known As -
Is Greek Founder -
Geographic Origin (for founder variants) -
Average frequency (large NGS studies) Variant not found in online data sets
Average frequency in greek population 0.00052
Allele Count 3
Allele Number 5752
Owner Despoina Kalfakakou
Options




Variant on transcripts


Gene     

AscendingTranscript     

Affects function     

Exon     

DNA change (cDNA)     

RNA change     

Protein     
PTCH1 NM_000264.3 -?/-? - c.1306G>A r.(?) p.(Asp436Asn)
PTCH1 NM_001083602.1 -?/-? - c.1108G>A r.(?) p.(Asp370Asn)
PTCH1 NM_001083603.1 -?/-? - c.1303G>A r.(?) p.(Asp435Asn)
PTCH1 NM_001083604.1 -?/-? - c.853G>A r.(?) p.(Asp285Asn)
PTCH1 NM_001083605.1 -?/-? - c.853G>A r.(?) p.(Asp285Asn)
PTCH1 NM_001083606.1 -?/-? - c.853G>A r.(?) p.(Asp285Asn)
PTCH1 NM_001083607.1 -?/-? - c.853G>A r.(?) p.(Asp285Asn)



Screenings


AscendingScreening ID     

Template     

Technique     

Type     

Genes screened     

Variants found     

Owner     
0000001800 DNA SEQ-NG-I 1 - 11 Despoina Kalfakakou