Genomic variant #0000034003

Individual ID 00017894
Chromosome 2
Allele Parent #2
Affects function (as reported) Probably does not affect function
Affects function (by curator) Probably does not affect function
DNA change (genomic) (Relative to hg19 / GRCh37) g.48025738C>T
Reference -
DB-ID MSH6_000072 See all 4 reported entries
dbSNP ID rs752105994
Variant remarks -
Genetic origin Germline
Segregation -
Also Known As -
Is Greek Founder -
Geographic Origin (for founder variants) -
Average frequency (large NGS studies) Variant not found in online data sets
Average frequency in greek population 0.00069
Allele Count 4
Allele Number 5762
Owner Despoina Kalfakakou
Options




Variant on transcripts


Gene     

AscendingTranscript     

Affects function     

Exon     

DNA change (cDNA)     

RNA change     

Protein     
MSH6 NM_000179.2 -?/-? - c.628-12C>T r.(=) p.(=)
MSH6 NM_001281492.1 -?/-? - c.238-12C>T r.(=) p.(=)
MSH6 NM_001281493.1 -?/-? - c.-279-12C>T r.(=) p.(=)
MSH6 NM_001281494.1 -?/-? - c.-275-16C>T r.(=) p.(=)



Screenings


AscendingScreening ID     

Template     

Technique     

Type     

Genes screened     

Variants found     

Owner     
0000002010 DNA SEQ-NG-I 1 - 6 Despoina Kalfakakou